Phenyx perl scripts - submit

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Job submit

Check here for remote submission in perl

release >=2.2 and <=2.5

Everything goes through the script

$(phenyxvar perlscripts)/submit/job-execute.pl 

Examples

$(phenyxvar perlscripts)/submit/job-execute.pl --id=15636 --action=postprocess
$(phenyxvar perlscripts)/submit/job-execute.pl --id=15636 --action=process,postprocess


Possible actions are

NB a --postprocesstag=xxx can be defined --postprocesstag=import

  • reset clean all index and so files

more

caveats

rescue.xml

If a job has failed, a file rescue.xml should have been created.

If you further make a new process or other action, the script will detect this rescue.xml file and will enter a failed branch process. If this file was generate by an error that you think was corrected (or at least you wish to try...), remove rescue.xml

Local submission of files below a given directory

  • you can download and save locally (e.g. c:\windows\temp\phenyx-batchsubmit.pl) the code from phenyx-batchsubmit.pl
  • edit the script to configure it according to your needs (setting peaklist path, extension, user name etc.)
  • launch the script by opening a cmd console and enter
perl c:\windows\temp\phenyx-batchsubmit.pl
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