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[[Category:User_Manual]]
[[Category:Phenyx]]
[[Category:Phenyx 2.5]]
[[Category:Phenyx 2.6]]

=Help=

===Link to the User Manual===
http://phenyx.vital-it.ch//docs/pwi/ManagementConsole.html#954795

===How to save your Mascot result in XML format to import into Phenyx===

*in the Mascot Search Results page, go to the Peptide Summary Report>Format As : select Export Search Results

 [[Image:Mascot_export_1.png]]
*click on the "Format As" button: opens the Export search results page
*check the boxes as follow, with special attention to: 
;Peptide Match Information, check boxes 
:start
:end
:Homology threshold
:Identity threshold

 [[Image:Mascot_export_2.png]]
*save the results by clicking on the Export search results

Ready to import your Mascot.xml file into Phenyx via the Management Console functionnality.

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===How to save your X!Tandem or X!Hunter results in XML format to import into Phenyx===

* From the ''Main model display page'', right click on the XML tab and save your GPM.xml file


[[Image:XTandem3.png]]
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===Import Original peak list===

Use this feature during import to allow retrieving the Peptide Macht Details View for imported job from third-party software such as X!Tandem